J4_7NWI_013
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7NWI|1|9|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NWI_013 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1792
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NWI|1|9|C|98
7NWI|1|9|A|99
7NWI|1|9|U|100
7NWI|1|9|U|101
7NWI|1|9|A|102
7NWI|1|9|A|103
7NWI|1|9|A|104
7NWI|1|9|U|105
7NWI|1|9|C|106
*
7NWI|1|9|G|355
7NWI|1|9|C|356
7NWI|1|9|C|357
*
7NWI|1|9|G|405
7NWI|1|9|U|406
7NWI|1|9|G|407
7NWI|1|9|A|408
7NWI|1|9|C|409
*
7NWI|1|9|G|431
7NWI|1|9|G|432
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- S4
- Chain II
- 40S ribosomal protein S8
- Chain LL
- 40S ribosomal protein S11
- Chain XX
- Ribosomal protein S23
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