3D structure

PDB id
7NWT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7NWT_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.053
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

7NWT|1|1|G|297
7NWT|1|1|G|298
7NWT|1|1|A|299
7NWT|1|1|A|300
7NWT|1|1|G|301
*
7NWT|1|1|C|316
7NWT|1|1|G|317
7NWT|1|1|C|318
7NWT|1|1|G|319
*
7NWT|1|1|C|323
7NWT|1|1|A|324
7NWT|1|1|G|325
*
7NWT|1|1|C|337
7NWT|1|1|G|338
7NWT|1|1|U|339
7NWT|1|1|A|340
7NWT|1|1|C|341

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.175 s