J4_7NWT_015
3D structure
- PDB id
- 7NWT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GU(4SU)G*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7NWT|1|5|U|7, 7NWT|1|5|U|47, 7NWT|1|5|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NWT_015 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.2244
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7NWT|1|5|G|6
7NWT|1|5|U|7
7NWT|1|5|4SU|8
7NWT|1|5|G|9
*
7NWT|1|5|C|25
7NWT|1|5|G|26
7NWT|1|5|U|27
*
7NWT|1|5|A|43
7NWT|1|5|A|44
7NWT|1|5|G|45
7NWT|1|5|A|46
7NWT|1|5|U|47
7NWT|1|5|C|48
7NWT|1|5|G|49
*
7NWT|1|5|C|65
7NWT|1|5|C|66
Current chains
- Chain 5
- fMet-NH-tRNA(fMet)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain r
- 30S ribosomal protein S13
Coloring options: