J4_7O5B_002

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAC*GAUGGUU*AUAAAAG*CAC

Length

20 nucleotides

Bulged bases

7O5B|1|A|G|181, 7O5B|1|A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|A|G|141
7O5B|1|A|A|142
7O5B|1|A|C|143
*
7O5B|1|A|G|177
7O5B|1|A|A|178
7O5B|1|A|U|179
7O5B|1|A|G|180
7O5B|1|A|G|181
7O5B|1|A|U|182
7O5B|1|A|U|183
*
7O5B|1|A|A|206
7O5B|1|A|U|207
7O5B|1|A|A|208
7O5B|1|A|A|209
7O5B|1|A|A|210
7O5B|1|A|A|211
7O5B|1|A|G|212
*
7O5B|1|A|C|227
7O5B|1|A|A|228
7O5B|1|A|C|229

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20