J4_7O5B_004
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GUAG*UGC*GAGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 7O5B|1|U|U|8
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O5B_004 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.3017
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7O5B|1|U|G|7
7O5B|1|U|U|8
7O5B|1|U|A|9
7O5B|1|U|G|10
*
7O5B|1|U|U|25
7O5B|1|U|G|26
7O5B|1|U|C|27
*
7O5B|1|U|G|43
7O5B|1|U|A|44
7O5B|1|U|G|45
7O5B|1|U|G|46
7O5B|1|U|U|47
7O5B|1|U|C|48
7O5B|1|U|G|49
*
7O5B|1|U|U|65
7O5B|1|U|C|66
Current chains
- Chain U
- tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- 50S ribosomal protein L16
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