J4_7O5B_007

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAAG*CGCAG*CGAG*CGCAUGAG

Length

21 nucleotides

Bulged bases

7O5B|1|X|A|699, 7O5B|1|X|U|700, 7O5B|1|X|G|701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O5B_007 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5408

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7O5B|1|X|C|645
7O5B|1|X|A|646
7O5B|1|X|A|647
7O5B|1|X|G|648
*
7O5B|1|X|C|670
7O5B|1|X|G|671
7O5B|1|X|C|672
7O5B|1|X|A|673
7O5B|1|X|G|674
*
7O5B|1|X|C|681
7O5B|1|X|G|682
7O5B|1|X|A|683
7O5B|1|X|G|684
*
7O5B|1|X|C|696
7O5B|1|X|G|697
7O5B|1|X|C|698
7O5B|1|X|A|699
7O5B|1|X|U|700
7O5B|1|X|G|701
7O5B|1|X|A|702
7O5B|1|X|G|703

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 3

50S ribosomal protein L35

Chain b

50S ribosomal protein L4

Chain i

50S ribosomal protein L15