J4_7O5B_008

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAAAG*CC*GAUC*GG

Length

14 nucleotides

Bulged bases

7O5B|1|X|G|1311, 7O5B|1|X|A|1312, 7O5B|1|X|A|1314, 7O5B|1|X|U|1692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O5B_008 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.1494

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7O5B|1|X|C|1310
7O5B|1|X|G|1311
7O5B|1|X|A|1312
7O5B|1|X|A|1313
7O5B|1|X|A|1314
7O5B|1|X|G|1315
*
7O5B|1|X|C|1333
7O5B|1|X|C|1334
*
7O5B|1|X|G|1690
7O5B|1|X|A|1691
7O5B|1|X|U|1692
7O5B|1|X|C|1693
*
7O5B|1|X|G|2038
7O5B|1|X|G|2039

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain k

50S ribosomal protein L17

Chain r

50S ribosomal protein L22