J4_7O5B_010

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

7O5B|1|X|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O5B_010 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1023

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7O5B|1|X|U|1352
7O5B|1|X|C|1353
*
7O5B|1|X|G|1377
7O5B|1|X|G|1378
7O5B|1|X|U|1379
7O5B|1|X|U|1380
7O5B|1|X|A|1381
7O5B|1|X|G|1382
*
7O5B|1|X|C|1443
7O5B|1|X|C|1444
*
7O5B|1|X|G|1642
7O5B|1|X|C|1643
7O5B|1|X|C|1644
7O5B|1|X|C|1645
7O5B|1|X|G|1646
7O5B|1|X|U|1647
7O5B|1|X|A|1648

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain s

50S ribosomal protein L23