J4_7O7Y_003
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUA(2MG)*C(M2G)(PSU)*AAG(7MG)UC(5MC)*GU
- Length
- 16 nucleotides
- Bulged bases
- 7O7Y|1|AT|U|8, 7O7Y|1|AT|U|47, 7O7Y|1|AT|C|48
- QA status
- Modified nucleotides: 2MG, M2G, PSU, 7MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O7Y_003 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.2653
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7O7Y|1|AT|A|7
7O7Y|1|AT|U|8
7O7Y|1|AT|A|9
7O7Y|1|AT|2MG|10
*
7O7Y|1|AT|C|25
7O7Y|1|AT|M2G|26
7O7Y|1|AT|PSU|27
*
7O7Y|1|AT|A|43
7O7Y|1|AT|A|44
7O7Y|1|AT|G|45
7O7Y|1|AT|7MG|46
7O7Y|1|AT|U|47
7O7Y|1|AT|C|48
7O7Y|1|AT|5MC|49
*
7O7Y|1|AT|G|65
7O7Y|1|AT|U|66
Current chains
- Chain AT
- P-site Phe-tRNA(Phe)
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ar
- 40S ribosomal protein S18
- Chain Ay
- 40S ribosomal protein S25
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 60S ribosomal protein L10
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