J4_7O7Z_005

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

7O7Z|1|B5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|196
7O7Z|1|B5|A|197
7O7Z|1|B5|A|198
7O7Z|1|B5|G|199
*
7O7Z|1|B5|C|215
7O7Z|1|B5|C|216
7O7Z|1|B5|C|217
7O7Z|1|B5|A|218
7O7Z|1|B5|G|219
7O7Z|1|B5|C|220
7O7Z|1|B5|C|221
7O7Z|1|B5|C|222
*
7O7Z|1|B5|G|226
7O7Z|1|B5|A|227
7O7Z|1|B5|C|228
*
7O7Z|1|B5|G|240
7O7Z|1|B5|G|241
7O7Z|1|B5|U|242
7O7Z|1|B5|A|243
7O7Z|1|B5|G|244

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26