J4_7O7Z_006

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

7O7Z|1|B5|G|859, 7O7Z|1|B5|U|873, 7O7Z|1|B5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|706
7O7Z|1|B5|C|707
*
7O7Z|1|B5|G|855
7O7Z|1|B5|A|856
7O7Z|1|B5|G|857
7O7Z|1|B5|G|858
7O7Z|1|B5|G|859
7O7Z|1|B5|A|860
7O7Z|1|B5|G|861
*
7O7Z|1|B5|U|871
7O7Z|1|B5|G|872
7O7Z|1|B5|U|873
7O7Z|1|B5|C|874
7O7Z|1|B5|G|875
7O7Z|1|B5|C|876
7O7Z|1|B5|C|877
7O7Z|1|B5|G|878
*
7O7Z|1|B5|C|1222
7O7Z|1|B5|A|1223
7O7Z|1|B5|C|1224
7O7Z|1|B5|G|1225
7O7Z|1|B5|G|1226
7O7Z|1|B5|G|1227
7O7Z|1|B5|G|1228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Be

eL32