J4_7O7Z_007

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUC*GCC*GG*CGAGCG

Length

14 nucleotides

Bulged bases

7O7Z|1|B5|G|1215, 7O7Z|1|B5|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|883
7O7Z|1|B5|U|884
7O7Z|1|B5|C|885
*
7O7Z|1|B5|G|985
7O7Z|1|B5|C|986
7O7Z|1|B5|C|987
*
7O7Z|1|B5|G|1126
7O7Z|1|B5|G|1127
*
7O7Z|1|B5|C|1212
7O7Z|1|B5|G|1213
7O7Z|1|B5|A|1214
7O7Z|1|B5|G|1215
7O7Z|1|B5|C|1216
7O7Z|1|B5|G|1217

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Bb

60S ribosomal protein L29