3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUC*GCC*GG*CGAGCG
Length
14 nucleotides
Bulged bases
7O7Z|1|B5|G|1215, 7O7Z|1|B5|C|1216
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7O7Z|1|B5|C|883
7O7Z|1|B5|U|884
7O7Z|1|B5|C|885
*
7O7Z|1|B5|G|985
7O7Z|1|B5|C|986
7O7Z|1|B5|C|987
*
7O7Z|1|B5|G|1126
7O7Z|1|B5|G|1127
*
7O7Z|1|B5|C|1212
7O7Z|1|B5|G|1213
7O7Z|1|B5|A|1214
7O7Z|1|B5|G|1215
7O7Z|1|B5|C|1216
7O7Z|1|B5|G|1217

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BE
60S ribosomal protein L6
Chain BF
Ribosomal Protein uL30
Chain Bb
60S ribosomal protein L29

Coloring options:

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