J4_7O7Z_010

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UC*GGUCAG*UC*GGCCGUA

Length

17 nucleotides

Bulged bases

7O7Z|1|B5|C|2280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|U|2252
7O7Z|1|B5|C|2253
*
7O7Z|1|B5|G|2277
7O7Z|1|B5|G|2278
7O7Z|1|B5|U|2279
7O7Z|1|B5|C|2280
7O7Z|1|B5|A|2281
7O7Z|1|B5|G|2282
*
7O7Z|1|B5|U|2381
7O7Z|1|B5|C|2382
*
7O7Z|1|B5|G|2620
7O7Z|1|B5|G|2621
7O7Z|1|B5|C|2622
7O7Z|1|B5|C|2623
7O7Z|1|B5|G|2624
7O7Z|1|B5|U|2625
7O7Z|1|B5|A|2626

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BR

60S ribosomal protein L19

Chain BX

uL23

Chain Bg

60S ribosomal protein L34

Chain Bh

uL29

Chain Bk

eL38

Chain Bl

eL39