J4_7O7Z_012
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GG*UGUGAA*UGGAAAG*UC
- Length
- 17 nucleotides
- Bulged bases
- 7O7Z|1|B5|A|2539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7O7Z_012 not in the Motif Atlas
- Homologous match to J4_8GLP_008
- Geometric discrepancy: 0.0366
- The information below is about J4_8GLP_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Z|1|B5|G|2461
7O7Z|1|B5|G|2462
*
7O7Z|1|B5|U|2480
7O7Z|1|B5|G|2481
7O7Z|1|B5|U|2482
7O7Z|1|B5|G|2483
7O7Z|1|B5|A|2484
7O7Z|1|B5|A|2485
*
7O7Z|1|B5|U|2535
7O7Z|1|B5|G|2536
7O7Z|1|B5|G|2537
7O7Z|1|B5|A|2538
7O7Z|1|B5|A|2539
7O7Z|1|B5|A|2540
7O7Z|1|B5|G|2541
*
7O7Z|1|B5|U|2561
7O7Z|1|B5|C|2562
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BR
- 60S ribosomal protein L19
- Chain BU
- Ribosomal protein eL22
- Chain Bg
- 60S ribosomal protein L34
- Chain Bk
- eL38
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