J4_7O7Z_012

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7O7Z|1|B5|A|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|G|2461
7O7Z|1|B5|G|2462
*
7O7Z|1|B5|U|2480
7O7Z|1|B5|G|2481
7O7Z|1|B5|U|2482
7O7Z|1|B5|G|2483
7O7Z|1|B5|A|2484
7O7Z|1|B5|A|2485
*
7O7Z|1|B5|U|2535
7O7Z|1|B5|G|2536
7O7Z|1|B5|G|2537
7O7Z|1|B5|A|2538
7O7Z|1|B5|A|2539
7O7Z|1|B5|A|2540
7O7Z|1|B5|G|2541
*
7O7Z|1|B5|U|2561
7O7Z|1|B5|C|2562

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BU

Ribosomal protein eL22

Chain Bg

60S ribosomal protein L34

Chain Bk

eL38