J4_7O81_003

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAG*CGU*AAGGUCC*GA

Length

16 nucleotides

Bulged bases

7O81|1|AJ|U|8, 7O81|1|AJ|U|47, 7O81|1|AJ|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7O81_003 not in the Motif Atlas

Homologous match to J4_5AXM_001

Geometric discrepancy: 0.3537

The information below is about J4_5AXM_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

7O81|1|AJ|U|7
7O81|1|AJ|U|8
7O81|1|AJ|A|9
7O81|1|AJ|G|10
*
7O81|1|AJ|C|25
7O81|1|AJ|G|26
7O81|1|AJ|U|27
*
7O81|1|AJ|A|43
7O81|1|AJ|A|44
7O81|1|AJ|G|45
7O81|1|AJ|G|46
7O81|1|AJ|U|47
7O81|1|AJ|C|48
7O81|1|AJ|C|49
*
7O81|1|AJ|G|65
7O81|1|AJ|A|66

Current chains

Chain AJ

A-site Met-tRNA(Met)

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BI

60S ribosomal protein L10