J4_7O81_007

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

7O81|1|B5|G|859, 7O81|1|B5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|C|706
7O81|1|B5|C|707
*
7O81|1|B5|G|855
7O81|1|B5|A|856
7O81|1|B5|G|857
7O81|1|B5|G|858
7O81|1|B5|G|859
7O81|1|B5|A|860
7O81|1|B5|G|861
*
7O81|1|B5|U|871
7O81|1|B5|G|872
7O81|1|B5|U|873
7O81|1|B5|C|874
7O81|1|B5|G|875
7O81|1|B5|C|876
7O81|1|B5|C|877
7O81|1|B5|G|878
*
7O81|1|B5|C|1222
7O81|1|B5|A|1223
7O81|1|B5|C|1224
7O81|1|B5|G|1225
7O81|1|B5|G|1226
7O81|1|B5|G|1227
7O81|1|B5|G|1228

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30

Chain Be

eL32