J4_7O81_011
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GGUCAG*UC*GGCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 7O81|1|B5|C|2280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O81|1|B5|U|2252
7O81|1|B5|C|2253
*
7O81|1|B5|G|2277
7O81|1|B5|G|2278
7O81|1|B5|U|2279
7O81|1|B5|C|2280
7O81|1|B5|A|2281
7O81|1|B5|G|2282
*
7O81|1|B5|U|2381
7O81|1|B5|C|2382
*
7O81|1|B5|G|2620
7O81|1|B5|G|2621
7O81|1|B5|C|2622
7O81|1|B5|C|2623
7O81|1|B5|G|2624
7O81|1|B5|U|2625
7O81|1|B5|A|2626
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BR
- 60S ribosomal protein L19
- Chain BX
- uL23
- Chain Bg
- 60S ribosomal protein L34
- Chain Bh
- uL29
- Chain Bk
- eL38
- Chain Bl
- eL39
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