J4_7O81_016

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

7O81|1|B5|A|3980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|C|3977
7O81|1|B5|U|3978
7O81|1|B5|A|3979
7O81|1|B5|A|3980
7O81|1|B5|G|3981
*
7O81|1|B5|U|4035
7O81|1|B5|U|4036
7O81|1|B5|G|4037
*
7O81|1|B5|C|4064
7O81|1|B5|C|4065
*
7O81|1|B5|G|4074
7O81|1|B5|G|4075
7O81|1|B5|G|4076

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BT

eL21

Chain Bo

eL42