J4_7ODE_003

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7ODE|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ODE_003 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0723

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ODE|1|I|G|1310
7ODE|1|I|G|1311
7ODE|1|I|U|1312
7ODE|1|I|U|1313
7ODE|1|I|C|1314
*
7ODE|1|I|G|1338
7ODE|1|I|G|1339
7ODE|1|I|U|1340
7ODE|1|I|G|1341
7ODE|1|I|A|1342
7ODE|1|I|G|1343
*
7ODE|1|I|C|1404
7ODE|1|I|U|1405
*
7ODE|1|I|A|1597
7ODE|1|I|A|1598
7ODE|1|I|U|1599
7ODE|1|I|C|1600
7ODE|1|I|G|1601
7ODE|1|I|U|1602
7ODE|1|I|A|1603
7ODE|1|I|C|1604

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23

Chain k

50S ribosomal protein L34