J4_7OG4_007

3D structure

PDB id

7OG4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7OG4|1|XA|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OG4_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1658

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7OG4|1|XA|C|2544
7OG4|1|XA|U|2545
7OG4|1|XA|G|2546
*
7OG4|1|XA|C|2569
7OG4|1|XA|C|2570
*
7OG4|1|XA|G|2587
7OG4|1|XA|C|2588
7OG4|1|XA|A|2589
7OG4|1|XA|A|2590
7OG4|1|XA|A|2591
7OG4|1|XA|G|2592
7OG4|1|XA|G|2593
7OG4|1|XA|U|2594
7OG4|1|XA|A|2595
7OG4|1|XA|G|2596
*
7OG4|1|XA|U|2630
7OG4|1|XA|G|2631
7OG4|1|XA|A|2632
7OG4|1|XA|A|2633
7OG4|1|XA|U|2634
7OG4|1|XA|G|2635

Current chains

Chain XA

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain XD

39S ribosomal protein L2, mitochondrial