J4_7OHV_004

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OHV_004 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.1312

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OHV|1|1|G|1674
7OHV|1|1|G|1675
*
7OHV|1|1|C|1693
7OHV|1|1|U|1694
*
7OHV|1|1|A|1752
7OHV|1|1|G|1753
*
7OHV|1|1|U|1772
7OHV|1|1|C|1773

Current chains

Chain 1

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L22-A

Chain k

60S ribosomal protein L38