J4_7OID_004

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7OID|1|A|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OID_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1696

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7OID|1|A|C|874
7OID|1|A|U|875
7OID|1|A|G|876
*
7OID|1|A|C|899
7OID|1|A|C|900
*
7OID|1|A|G|917
7OID|1|A|C|918
7OID|1|A|A|919
7OID|1|A|A|920
7OID|1|A|A|921
7OID|1|A|G|922
7OID|1|A|G|923
7OID|1|A|U|924
7OID|1|A|A|925
7OID|1|A|G|926
*
7OID|1|A|U|960
7OID|1|A|G|961
7OID|1|A|A|962
7OID|1|A|A|963
7OID|1|A|U|964
7OID|1|A|G|965

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial