J4_7OIE_004

3D structure

PDB id

7OIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7OIE|1|A|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIE_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.154

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7OIE|1|A|C|874
7OIE|1|A|U|875
7OIE|1|A|G|876
*
7OIE|1|A|C|899
7OIE|1|A|C|900
*
7OIE|1|A|G|917
7OIE|1|A|C|918
7OIE|1|A|A|919
7OIE|1|A|A|920
7OIE|1|A|A|921
7OIE|1|A|G|922
7OIE|1|A|G|923
7OIE|1|A|U|924
7OIE|1|A|A|925
7OIE|1|A|G|926
*
7OIE|1|A|U|960
7OIE|1|A|G|961
7OIE|1|A|A|962
7OIE|1|A|A|963
7OIE|1|A|U|964
7OIE|1|A|G|965

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial