3D structure

PDB id
7OIG (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OIG_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0612
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

7OIG|1|1|G|297
7OIG|1|1|G|298
7OIG|1|1|A|299
7OIG|1|1|A|300
7OIG|1|1|G|301
*
7OIG|1|1|C|316
7OIG|1|1|G|317
7OIG|1|1|C|318
7OIG|1|1|G|319
*
7OIG|1|1|C|323
7OIG|1|1|A|324
7OIG|1|1|G|325
*
7OIG|1|1|C|337
7OIG|1|1|G|338
7OIG|1|1|U|339
7OIG|1|1|A|340
7OIG|1|1|C|341

Current chains

Chain 1
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain T
50S ribosomal protein L24

Coloring options:


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