3D structure

PDB id
7OIG (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
7OIG|1|1|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OIG_003 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.2442
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

7OIG|1|1|C|601
7OIG|1|1|A|602
7OIG|1|1|A|603
7OIG|1|1|G|604
*
7OIG|1|1|C|624
7OIG|1|1|G|625
7OIG|1|1|A|626
7OIG|1|1|A|627
7OIG|1|1|G|628
*
7OIG|1|1|C|635
7OIG|1|1|G|636
7OIG|1|1|A|637
7OIG|1|1|G|638
*
7OIG|1|1|C|650
7OIG|1|1|G|651
7OIG|1|1|U|652
7OIG|1|1|U|653
7OIG|1|1|A|654
7OIG|1|1|A|655
7OIG|1|1|G|656

Current chains

Chain 1
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain K
50S ribosomal protein L15
Chain d
50S ribosomal protein L35

Coloring options:


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