3D structure

PDB id
7OIG (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
7OIG|1|1|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OIG_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0795
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7OIG|1|1|G|1310
7OIG|1|1|G|1311
7OIG|1|1|U|1312
7OIG|1|1|U|1313
7OIG|1|1|C|1314
*
7OIG|1|1|G|1338
7OIG|1|1|G|1339
7OIG|1|1|U|1340
7OIG|1|1|G|1341
7OIG|1|1|A|1342
7OIG|1|1|G|1343
*
7OIG|1|1|C|1404
7OIG|1|1|U|1405
*
7OIG|1|1|A|1597
7OIG|1|1|A|1598
7OIG|1|1|U|1599
7OIG|1|1|C|1600
7OIG|1|1|G|1601
7OIG|1|1|U|1602
7OIG|1|1|A|1603
7OIG|1|1|C|1604

Current chains

Chain 1
23S rRNA

Nearby chains

Chain S
50S ribosomal protein L23
Chain c
50S ribosomal protein L34

Coloring options:


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