J4_7OII_002

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OII_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0664

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7OII|1|1|G|297
7OII|1|1|G|298
7OII|1|1|A|299
7OII|1|1|A|300
7OII|1|1|G|301
*
7OII|1|1|C|316
7OII|1|1|G|317
7OII|1|1|C|318
7OII|1|1|G|319
*
7OII|1|1|C|323
7OII|1|1|A|324
7OII|1|1|G|325
*
7OII|1|1|C|337
7OII|1|1|G|338
7OII|1|1|U|339
7OII|1|1|A|340
7OII|1|1|C|341

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24