J4_7OIZ_006

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OIZ_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0684

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7OIZ|1|a|G|297
7OIZ|1|a|G|298
7OIZ|1|a|A|299
7OIZ|1|a|A|300
7OIZ|1|a|G|301
*
7OIZ|1|a|C|316
7OIZ|1|a|G|317
7OIZ|1|a|C|318
7OIZ|1|a|G|319
*
7OIZ|1|a|C|323
7OIZ|1|a|A|324
7OIZ|1|a|G|325
*
7OIZ|1|a|C|337
7OIZ|1|a|G|338
7OIZ|1|a|U|339
7OIZ|1|a|A|340
7OIZ|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24