J4_7OJ0_004
3D structure
- PDB id
- 7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAG*CAC*GGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 7OJ0|1|V|U|8, 7OJ0|1|V|U|47, 7OJ0|1|V|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OJ0_004 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.2185
- The information below is about J4_7EQJ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7OJ0|1|V|G|7
7OJ0|1|V|U|8
7OJ0|1|V|A|9
7OJ0|1|V|G|10
*
7OJ0|1|V|C|25
7OJ0|1|V|A|26
7OJ0|1|V|C|27
*
7OJ0|1|V|G|43
7OJ0|1|V|G|44
7OJ0|1|V|G|45
7OJ0|1|V|G|46
7OJ0|1|V|U|47
7OJ0|1|V|C|48
7OJ0|1|V|G|49
*
7OJ0|1|V|U|65
7OJ0|1|V|C|66
Current chains
- Chain V
- tRNA
Nearby chains
- Chain 8
- Peptide chain release factor RF2
- Chain M
- 30S ribosomal protein S13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
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