J4_7OJ0_006

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OJ0_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0893

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7OJ0|1|a|G|297
7OJ0|1|a|G|298
7OJ0|1|a|A|299
7OJ0|1|a|A|300
7OJ0|1|a|G|301
*
7OJ0|1|a|C|316
7OJ0|1|a|G|317
7OJ0|1|a|C|318
7OJ0|1|a|G|319
*
7OJ0|1|a|C|323
7OJ0|1|a|A|324
7OJ0|1|a|G|325
*
7OJ0|1|a|C|337
7OJ0|1|a|G|338
7OJ0|1|a|U|339
7OJ0|1|a|A|340
7OJ0|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24