J4_7OJ0_009

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7OJ0|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OJ0_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0673

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OJ0|1|a|G|1310
7OJ0|1|a|G|1311
7OJ0|1|a|U|1312
7OJ0|1|a|U|1313
7OJ0|1|a|C|1314
*
7OJ0|1|a|G|1338
7OJ0|1|a|G|1339
7OJ0|1|a|U|1340
7OJ0|1|a|G|1341
7OJ0|1|a|A|1342
7OJ0|1|a|G|1343
*
7OJ0|1|a|C|1404
7OJ0|1|a|U|1405
*
7OJ0|1|a|A|1597
7OJ0|1|a|A|1598
7OJ0|1|a|U|1599
7OJ0|1|a|C|1600
7OJ0|1|a|G|1601
7OJ0|1|a|U|1602
7OJ0|1|a|A|1603
7OJ0|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23