J4_7OLC_002
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAG*CGCC*GAG*CGUAUAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OLC_002 not in the Motif Atlas
- Homologous match to J4_8C3A_002
- Geometric discrepancy: 0.4845
- The information below is about J4_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OLC|1|1|C|179
7OLC|1|1|U|180
7OLC|1|1|G|181
7OLC|1|1|A|182
7OLC|1|1|G|183
*
7OLC|1|1|C|199
7OLC|1|1|G|200
7OLC|1|1|C|201
7OLC|1|1|C|202
*
7OLC|1|1|G|206
7OLC|1|1|A|207
7OLC|1|1|G|208
*
7OLC|1|1|C|220
7OLC|1|1|G|221
7OLC|1|1|U|222
7OLC|1|1|A|223
7OLC|1|1|U|224
7OLC|1|1|A|225
7OLC|1|1|G|226
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
Coloring options: