J4_7OLC_011

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAUUAAAUC*GCC*GUAAC*GGA

Length

21 nucleotides

Bulged bases

7OLC|1|2|A|356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLC|1|2|U|97
7OLC|1|2|C|98
7OLC|1|2|A|99
7OLC|1|2|U|100
7OLC|1|2|U|101
7OLC|1|2|A|102
7OLC|1|2|A|103
7OLC|1|2|A|104
7OLC|1|2|U|105
7OLC|1|2|C|106
*
7OLC|1|2|G|304
7OLC|1|2|C|305
7OLC|1|2|C|306
*
7OLC|1|2|G|354
7OLC|1|2|U|355
7OLC|1|2|A|356
7OLC|1|2|A|357
7OLC|1|2|C|358
*
7OLC|1|2|G|380
7OLC|1|2|G|381
7OLC|1|2|A|382

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11-like protein

Chain SX

40S ribosomal protein s23-like protein