J4_7OLC_013

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGGAG*CUACACUGAC*GUCGUGCUGG*CGAGGAAUC

Length

36 nucleotides

Bulged bases

7OLC|1|2|U|1469, 7OLC|1|2|G|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLC|1|2|G|1163
7OLC|1|2|G|1164
7OLC|1|2|U|1165
7OLC|1|2|G|1166
7OLC|1|2|G|1167
7OLC|1|2|A|1168
7OLC|1|2|G|1169
*
7OLC|1|2|C|1463
7OLC|1|2|U|1464
7OLC|1|2|A|1465
7OLC|1|2|C|1466
7OLC|1|2|A|1467
7OLC|1|2|C|1468
7OLC|1|2|U|1469
7OLC|1|2|G|1470
7OLC|1|2|A|1471
7OLC|1|2|C|1472
*
7OLC|1|2|G|1527
7OLC|1|2|U|1528
7OLC|1|2|C|1529
7OLC|1|2|G|1530
7OLC|1|2|U|1531
7OLC|1|2|G|1532
7OLC|1|2|C|1533
7OLC|1|2|U|1534
7OLC|1|2|G|1535
7OLC|1|2|G|1536
*
7OLC|1|2|C|1567
7OLC|1|2|G|1568
7OLC|1|2|A|1569
7OLC|1|2|G|1570
7OLC|1|2|G|1571
7OLC|1|2|A|1572
7OLC|1|2|A|1573
7OLC|1|2|U|1574
7OLC|1|2|C|1575

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein

Chain SZ

40S ribosomal protein S25