J4_7OLC_014
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UC*GAGUCG*CAAAAUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 7OLC|1|1|U|291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OLC_014 not in the Motif Atlas
- Homologous match to J4_8CRE_001
- Geometric discrepancy: 0.158
- The information below is about J4_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OLC|1|1|U|113
7OLC|1|1|C|114
*
7OLC|1|1|G|260
7OLC|1|1|A|261
7OLC|1|1|G|262
7OLC|1|1|U|263
7OLC|1|1|C|264
7OLC|1|1|G|265
*
7OLC|1|1|C|286
7OLC|1|1|A|287
7OLC|1|1|A|288
7OLC|1|1|A|289
7OLC|1|1|A|290
7OLC|1|1|U|291
7OLC|1|1|G|292
*
7OLC|1|1|U|309
7OLC|1|1|A|310
7OLC|1|1|A|311
7OLC|1|1|A|312
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
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