J4_7OLD_003

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAC*GG*UGAUA*UAG

Length

17 nucleotides

Bulged bases

7OLD|1|1|A|1435, 7OLD|1|1|U|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|1|C|1434
7OLD|1|1|A|1435
7OLD|1|1|A|1436
7OLD|1|1|A|1437
7OLD|1|1|U|1438
7OLD|1|1|A|1439
7OLD|1|1|C|1440
*
7OLD|1|1|G|1458
7OLD|1|1|G|1459
*
7OLD|1|1|U|1857
7OLD|1|1|G|1858
7OLD|1|1|A|1859
7OLD|1|1|U|1860
7OLD|1|1|A|1861
*
7OLD|1|1|U|2314
7OLD|1|1|A|2315
7OLD|1|1|G|2316

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein