J4_7OLD_009

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

7OLD|1|1|A|2616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|1|C|2613
7OLD|1|1|U|2614
7OLD|1|1|A|2615
7OLD|1|1|A|2616
7OLD|1|1|G|2617
*
7OLD|1|1|U|2671
7OLD|1|1|U|2672
7OLD|1|1|G|2673
*
7OLD|1|1|C|2700
7OLD|1|1|C|2701
*
7OLD|1|1|G|2710
7OLD|1|1|U|2711
7OLD|1|1|G|2712

Current chains

Chain 1

26S rRNA

Nearby chains

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain LD

60S ribosomal protein l5-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lo

60S ribosomal protein L44-like protein