J4_7OLD_012
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUGC*GCU
- Length
- 25 nucleotides
- Bulged bases
- 7OLD|1|2|A|620, 7OLD|1|2|A|1024, 7OLD|1|2|U|1027, 7OLD|1|2|U|1029
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OLD|1|2|A|619
7OLD|1|2|A|620
7OLD|1|2|G|621
*
7OLD|1|2|C|973
7OLD|1|2|G|974
7OLD|1|2|A|975
7OLD|1|2|A|976
7OLD|1|2|A|977
7OLD|1|2|G|978
*
7OLD|1|2|C|1019
7OLD|1|2|C|1020
7OLD|1|2|A|1021
7OLD|1|2|U|1022
7OLD|1|2|A|1023
7OLD|1|2|A|1024
7OLD|1|2|A|1025
7OLD|1|2|C|1026
7OLD|1|2|U|1027
7OLD|1|2|A|1028
7OLD|1|2|U|1029
7OLD|1|2|G|1030
7OLD|1|2|C|1031
*
7OLD|1|2|G|1099
7OLD|1|2|C|1100
7OLD|1|2|U|1101
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41-A
- Chain Lp
- 60S ribosomal protein L43-like protein
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SN
- 40S ribosomal protein S13-like protein
- Chain SO
- 40S ribosomal protein S14-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
- Chain Sa
- 40S ribosomal protein S26
Coloring options: