J4_7OLD_016
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUAG*CAUC*GGAGACC*GU
- Length
- 17 nucleotides
- Bulged bases
- 7OLD|1|5|U|8, 7OLD|1|5|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OLD_016 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.3572
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|5|A|7
7OLD|1|5|U|8
7OLD|1|5|A|9
7OLD|1|5|G|10
*
7OLD|1|5|C|25
7OLD|1|5|A|26
7OLD|1|5|U|27
7OLD|1|5|C|28
*
7OLD|1|5|G|42
7OLD|1|5|G|43
7OLD|1|5|A|44
7OLD|1|5|G|45
7OLD|1|5|A|46
7OLD|1|5|C|47
7OLD|1|5|C|48
*
7OLD|1|5|G|64
7OLD|1|5|U|65
Current chains
- Chain 5
- pe/E tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- HABP4_PAI-RBP1 domain-containing protein
- Chain Lo
- 60S ribosomal protein L44-like protein
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