J4_7OPE_003
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAAG*CGCC*GGA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OPE_003 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.13
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OPE|1|A|U|340
7OPE|1|A|G|341
7OPE|1|A|A|342
7OPE|1|A|A|343
7OPE|1|A|G|344
*
7OPE|1|A|C|360
7OPE|1|A|G|361
7OPE|1|A|C|362
7OPE|1|A|C|363
*
7OPE|1|A|G|367
7OPE|1|A|G|368
7OPE|1|A|A|369
*
7OPE|1|A|U|381
7OPE|1|A|G|382
7OPE|1|A|U|383
7OPE|1|A|A|384
7OPE|1|A|G|385
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L4
- Chain Y
- 50S ribosomal protein L24
Coloring options: