J4_7OPE_005
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAG*CC*GAUC*GG
- Length
- 14 nucleotides
- Bulged bases
- 7OPE|1|A|G|1311, 7OPE|1|A|A|1312, 7OPE|1|A|U|1692
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OPE_005 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.1203
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OPE|1|A|C|1310
7OPE|1|A|G|1311
7OPE|1|A|A|1312
7OPE|1|A|A|1313
7OPE|1|A|A|1314
7OPE|1|A|G|1315
*
7OPE|1|A|C|1333
7OPE|1|A|C|1334
*
7OPE|1|A|G|1690
7OPE|1|A|A|1691
7OPE|1|A|U|1692
7OPE|1|A|C|1693
*
7OPE|1|A|G|2038
7OPE|1|A|G|2039
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L17
- Chain W
- 50S ribosomal protein L22
- Chain f
- 50S ribosomal protein L32
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