J4_7OPE_010

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

7OPE|1|A|A|2000

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OPE_010 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1182

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7OPE|1|A|C|1862
7OPE|1|A|U|1863
7OPE|1|A|G|1864
*
7OPE|1|A|C|1934
7OPE|1|A|G|1935
*
7OPE|1|A|C|1953
7OPE|1|A|C|1954
7OPE|1|A|U|1955
7OPE|1|A|A|1956
7OPE|1|A|A|1957
7OPE|1|A|G|1958
7OPE|1|A|G|1959
7OPE|1|A|U|1960
7OPE|1|A|A|1961
7OPE|1|A|G|1962
*
7OPE|1|A|C|1996
7OPE|1|A|G|1997
7OPE|1|A|A|1998
7OPE|1|A|A|1999
7OPE|1|A|A|2000
7OPE|1|A|G|2001

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Uncharacterized protein YabO

Chain 2

Transfer RNA; tRNA

Chain E

50S ribosomal protein L2