J4_7OTC_005

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7OTC|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OTC_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0751

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OTC|1|A|G|1310
7OTC|1|A|G|1311
7OTC|1|A|U|1312
7OTC|1|A|U|1313
7OTC|1|A|C|1314
*
7OTC|1|A|G|1338
7OTC|1|A|G|1339
7OTC|1|A|U|1340
7OTC|1|A|G|1341
7OTC|1|A|A|1342
7OTC|1|A|G|1343
*
7OTC|1|A|C|1404
7OTC|1|A|U|1405
*
7OTC|1|A|A|1597
7OTC|1|A|A|1598
7OTC|1|A|U|1599
7OTC|1|A|C|1600
7OTC|1|A|G|1601
7OTC|1|A|U|1602
7OTC|1|A|A|1603
7OTC|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23