J4_7P48_001
3D structure
- PDB id
- 7P48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus ribosome in complex with Sal(B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUGG*CGU*AAGGUCG*CUC
- Length
- 18 nucleotides
- Bulged bases
- 7P48|1|5|U|8, 7P48|1|5|U|48, 7P48|1|5|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7P48_001 not in the Motif Atlas
- Homologous match to J4_4WT8_030
- Geometric discrepancy: 0.3042
- The information below is about J4_4WT8_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7P48|1|5|G|6
7P48|1|5|A|7
7P48|1|5|U|8
7P48|1|5|G|9
7P48|1|5|G|10
*
7P48|1|5|C|26
7P48|1|5|G|27
7P48|1|5|U|28
*
7P48|1|5|A|44
7P48|1|5|A|45
7P48|1|5|G|46
7P48|1|5|G|47
7P48|1|5|U|48
7P48|1|5|C|49
7P48|1|5|G|50
*
7P48|1|5|C|66
7P48|1|5|U|67
7P48|1|5|C|68
Current chains
- Chain 5
- P-site tRNA
Nearby chains
- Chain 6
- ABC-F type ribosomal protection protein
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
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