J4_7P48_003

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P48_003 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.134

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7P48|1|A|C|340
7P48|1|A|G|341
7P48|1|A|A|342
7P48|1|A|A|343
7P48|1|A|U|344
*
7P48|1|A|A|359
7P48|1|A|A|360
7P48|1|A|U|361
7P48|1|A|C|362
*
7P48|1|A|G|366
7P48|1|A|A|367
7P48|1|A|A|368
*
7P48|1|A|U|380
7P48|1|A|G|381
7P48|1|A|U|382
7P48|1|A|A|383
7P48|1|A|G|384

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L24