J4_7P7Q_003
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAG*CGCAG*CGAG*CGAAUGAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7P7Q_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.4272
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7P7Q|1|A|C|637
7P7Q|1|A|G|638
7P7Q|1|A|A|639
7P7Q|1|A|G|640
*
7P7Q|1|A|C|662
7P7Q|1|A|G|663
7P7Q|1|A|C|664
7P7Q|1|A|A|665
7P7Q|1|A|G|666
*
7P7Q|1|A|C|673
7P7Q|1|A|G|674
7P7Q|1|A|A|675
7P7Q|1|A|G|676
*
7P7Q|1|A|C|688
7P7Q|1|A|G|689
7P7Q|1|A|A|690
7P7Q|1|A|A|691
7P7Q|1|A|U|692
7P7Q|1|A|G|693
7P7Q|1|A|A|694
7P7Q|1|A|G|695
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
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