J4_7P7Q_007

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUG*UC*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

7P7Q|1|A|U|1486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P7Q_007 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.169

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7P7Q|1|A|A|1485
7P7Q|1|A|U|1486
7P7Q|1|A|G|1487
*
7P7Q|1|A|U|1508
7P7Q|1|A|C|1509
*
7P7Q|1|A|G|1568
7P7Q|1|A|G|1569
7P7Q|1|A|G|1570
7P7Q|1|A|A|1571
7P7Q|1|A|G|1572
*
7P7Q|1|A|C|1587
7P7Q|1|A|G|1588
7P7Q|1|A|A|1589
7P7Q|1|A|A|1590
7P7Q|1|A|G|1591
7P7Q|1|A|U|1592

Current chains

Chain A

23S rRNA

Nearby chains