J4_7P7Q_008

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P7Q_008 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0497

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7P7Q|1|A|G|1785
7P7Q|1|A|A|1786
7P7Q|1|A|C|1787
7P7Q|1|A|U|1788
7P7Q|1|A|G|1789
*
7P7Q|1|A|C|1801
7P7Q|1|A|A|1802
7P7Q|1|A|C|1803
7P7Q|1|A|A|1804
7P7Q|1|A|G|1805
*
7P7Q|1|A|U|1840
7P7Q|1|A|G|1841
7P7Q|1|A|A|1842
7P7Q|1|A|C|1843
*
7P7Q|1|A|G|1988
7P7Q|1|A|U|1989
7P7Q|1|A|A|1990
7P7Q|1|A|A|1991
7P7Q|1|A|C|1992

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2