J4_7PJS_004

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7PJS|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJS_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0689

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PJS|1|A|G|1310
7PJS|1|A|G|1311
7PJS|1|A|U|1312
7PJS|1|A|U|1313
7PJS|1|A|C|1314
*
7PJS|1|A|G|1338
7PJS|1|A|G|1339
7PJS|1|A|U|1340
7PJS|1|A|G|1341
7PJS|1|A|A|1342
7PJS|1|A|G|1343
*
7PJS|1|A|C|1404
7PJS|1|A|U|1405
*
7PJS|1|A|A|1597
7PJS|1|A|A|1598
7PJS|1|A|U|1599
7PJS|1|A|C|1600
7PJS|1|A|G|1601
7PJS|1|A|U|1602
7PJS|1|A|A|1603
7PJS|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23