J4_7PJU_015
3D structure
- PDB id
- 7PJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 7PJU|1|w|4SU|8, 7PJU|1|w|U|47, 7PJU|1|w|C|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PJU_015 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.3686
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7PJU|1|w|A|7
7PJU|1|w|4SU|8
7PJU|1|w|A|9
7PJU|1|w|G|10
*
7PJU|1|w|C|25
7PJU|1|w|A|26
7PJU|1|w|G|27
*
7PJU|1|w|C|43
7PJU|1|w|G|44
7PJU|1|w|U|45
7PJU|1|w|G7M|46
7PJU|1|w|U|47
7PJU|1|w|C|48
7PJU|1|w|C|49
*
7PJU|1|w|G|65
7PJU|1|w|U|66
Current chains
- Chain w
- P-site fMet-Phe-tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: